Miscellaneous Notes


  • Comet's Google group. Post your questions, problems, and feature requests here.
  • If you would rather not post to this public forum, feel free to e-mail me directly (jke000 at gmail dot com or engj at uw dot edu).

To run Comet, you need one or more input spectral files in mzXML, mzML, mgf, or ms2/cms2 formats and a comet.params file. Then issue a command such as:

  • comet.exe input.mzXML
  • comet.exe input.mzML
  • comet.exe input.mgf
  • comet.exe input.ms2