Comet parameter: allowed_missed_cleavage

  • Number of allowed missed enzyme cleavages in a peptide.
  • Parameter is not applied of the no-enzyme option is specified in the search_enzyme_number parameter.
  • The default value is "2" if this parameter is missing.

Example:
allowed_missed_cleavage = 0     for no missed cleavages
allowed_missed_cleavage = 2     allow two missed cleavages