Comet

Comet parameter: show_fragment_ions

• This parameter affects .out files only i.e. output_outfiles set to 1.
• This parameter controls whether or not the theoretical fragment ion masses for the top peptide hit are calculated and dislayed at the end of an .out file.
• Valid values are 0 and 1.
• The default value is "0" if this parameter is missing.

Example:
show_fragment_ions = 0
show_fragment_ions = 1