Comet parameter: peff_verbose_output

  • Specifies whether the verbose output is reported during a PEFF search. Examples of the reporting includes not finding an entry in the OBO file, amino acid variant same as original residue, invalid mod/variant amino acid position, etc.
  • Valid values are 0 and 1.
  • To suppress verbose output, set the value to 0.
  • To show verbose output, set the value to 1.
  • The default value is "0" if this parameter is missing.
  • This is a hidden parameter that is not included in the parameters file generated by "comet -p". You must manually add this parameter if you want to set it.

peff_verbose_output = 1